http://www.mangago.me/read-manga/brothers_yamamoto_kotetsuko/
pretty sure this series had a trans male character (biologically male but prefers to be referred as she), tho it's the side couple.
the whole trans thing is not really given much 'attention' should I say. but this is the only one I can remember.
http://www.mangago.me/read-manga/broth......
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