Yaoi with samurai or ninjas

http://www.mangago.zone/read-manga/ichigo_no_yume_shimatsuya_risuke_no_kaii_jikenchou/
http://www.mangago.zone/read-manga/mugen_no_roukaku/
http://www.mangago.zone/read-manga/hua_hua_you_long/
http://www.mangago.zone/read-manga/sengoku_paradise/
http://www.mangago.zone/read-manga/feng_yu_jiu_tian/
http://www.mangago.zone/read-manga/neko_samurai/
http://www.mangago.zone/read-manga/hana_sakasemashou/
http://www.mangago.zone/read-manga/tsuki_wa_yamiyo_ni_kakuru_ga_gotoku/

Oh, so many! Thanks a lot! :)

haha just found bara ninja: http://www.mangago.zone/read-manga/swift_as_lightning/

Cool, I never read barra, but let's try!

*bara

Some more..
http://www.mangago.zone/read-manga/hana_shinobu_no_koi/ - Ninjas in present time
http://www.mangago.zone/read-manga/hoshi_yo_oka_yo_fuyu_no_ao_yo/
http://www.mangago.zone/read-manga/matsugo_no_yume/ - Uke foresees
http://www.mangago.zone/read-manga/motte_meisubeshi/ - prequel
http://www.mangago.zone/read-manga/koi_no_yami/ - sequel
http://www.mangago.zone/read-manga/hoshigari_na_kimi_to_futsutsuka_na_boku/ - Ch.2/4/5
http://www.mangago.zone/read-manga/1000_years_1_love/
http://www.mangago.zone/read-manga/oucho_haru_no_yaoi_no_romance/
http://www.mangago.zone/read-manga/anata_no_tame_nara_doko_made_mo/ - Vol.2
http://www.mangago.zone/read-manga/yorube_naki_mono/ - Historical Assassin
http://www.mangago.zone/read-manga/mumyoutou/ - Historical Assassin
http://www.mangago.zone/read-manga/tsukigasa/ - Drama
http://www.mangago.zone/read-manga/touzandou_tentsui_ibun/

Wow, that's a lot! Thank you so much!!

http://www.mangago.zone/read-manga/haru_wo_daite_ita/
(ch.: 24-25.)

http://www.mangago.zone/read-manga/gakuran_ninpouchou/

http://www.mangago.zone/read-manga/ai_no_konseki_yajuu_gunsou_to_aigan_guni/

Thank you too for the recommendations!