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I'm a gay man and I never call my partner husband or wife or girlfriend he's a man too so I use male pronouns with him.
I know people are like that too, I know some, but in the comic is kinda weird because gives a strange vibe that the uke/omega need to be small and fragile, while the seme/alpha is the man the strong one
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I see where you're coming from but this has nothing to do with that. It's just a difference in culture. The Japanese like to jokingly call their favorite anime characters "yome" (meaning wife) regardless of gender. For example, my yome is Kaneki from Tokyo Ghoul (nope, but an example). The author simply preferred to use wife and mama in his/her story especially since he's the one who gave birth. It's just preference. Respect that.
Wife? Mama? He's a man for god's sake
ヽ(`Д´)ノ