um im not sure about you, but i like these
http://www.mangago.zone/read-manga/koi_ni_nare/
http://www.mangago.zone/read-manga/nemureru_hana/ - this one is a bit rough, but i found it nice in the end.
http://www.mangago.zone/read-manga/hidamari_ga_kikoeru/ - while this is actually shounen ai it is one of the most heart warming things ive ever read.
http://www.mangago.zone/read-manga/danshi_koukouseiteki_kazoku_keikaku/
http://www.mangago.zone/read-manga/kare_no_tokubetsu_na_kare/ - i dont know if you would call this heart warming but i thoroughly enjoy this one.
http://www.mangago.zone/read-manga/dekichatta_danshi/
i hope this is what you wanted
Feels so gloomy these past days. Guys, can you recommend me some yaoi manga with heart warming story..? I'm grateful with the newest update, but i want to feel the nostalgic feeling from sweet and good developed ones. ╥﹏╥