Responses
The anime diverges from the manga in Season 1, does anime-only material in Season 2, and goes back to the manga for Season 3 onward. So its kinda hard to pick up where it leaves off because there's a lot of extra material. Pluto and the angels, for example, are nowhere in the manga.
I would read/skim through the earlier chapters so you have an idea of what has happened and what hasn't. If you've seen up to Book of Atlantic, the chapter you'll start reading at is 66.
If I have to continue reading the manga from where the anime had a closure .... Which chapter shall I refer to?